2023
Verhagen, N. B., N. K. Koerber, A. Szabo, B. Taylor, N. J Wainaina, D. B. Evans, and A. N. Kothari, "Vaccination Against SARS-CoV-2 Decreases Risk of Adverse Events in Patients who Develop COVID-19 Following Cancer Surgery.", Ann Surg Oncol, vol. 30, issue 3, pp. 1305-1308, 2023 Mar.
PMCID: PMC9734328 PMID: 36479662
Brandt, P. S., A. Kho, Y. Luo, J. A. Pacheco, T. L. Walunas, H. Hakonarson, G. Hripcsak, C. Liu, N. Shang, C. Weng, et al., "Characterizing variability of electronic health record-driven phenotype definitions.", J Am Med Inform Assoc, vol. 30, issue 3, pp. 427-437, 2023 Feb 16.
PMCID: PMC9933077 PMID: 36474423
Arvisais-Anhalt, S., A. Ravi, B. Weia, J. Aarts, H. B. Ahmad, E. Araj, J. A. Bauml, M. Benham-Hutchins, A. D. Boyd, A. Brecht-Doscher, et al., "Paging the Clinical Informatics Community: Respond STAT to Dobbs v. Jackson's Women's Health Organization.", Appl Clin Inform, vol. 14, issue 1, pp. 164-171, 2023 Jan.
PMCID: PMC9977563 PMID: 36535703
Gupta, R. S., S. Sehgal, M. Wlodarski, L. A. Bilaver, F. H. Wehbe, J. M. Spergel, J. Wang, C. E. Ciaccio, S. R. Nimmagadda, A. Assa'ad, et al., "Accelerating Food Allergy Research: Need for a Data Commons.", J Allergy Clin Immunol Pract, vol. 11, issue 4, pp. 1063-1067, 2023 Apr.
2022
Rohani, R., M. H. Scheetz, H. K. Donnelly, A. Donayre, M. Kang, E. Diaz, K. Dedicatoria, A. R. Hauser, E. A. Ozer, S. Nozick, et al., "Individual target pharmacokinetic/pharmacodynamic attainment rates among meropenem-treated patients admitted to the ICU with hospital-acquired pneumonia.", J Antimicrob Chemother, vol. 77, issue 11, pp. 2956-2959, 2022 Oct 28.
PMCID: PMC10205601 PMID: 35869779
Chow, J. H., A. Rahnavard, M. Gomberg-Maitland, R. Chatterjee, P. Patodi, D. P. Yamane, A. R. Levine, D. Davison, K. Hawkins, A. M. Jackson, et al., "Association of Early Aspirin Use With In-Hospital Mortality in Patients With Moderate COVID-19.", JAMA Netw Open, vol. 5, issue 3, pp. e223890, 2022 Mar 01.
PMCID: PMC8948531 PMID: 35323950
Burton, S. V., A. L. Valenta, J. Starren, J. Abraham, T. Nelson, K. Kochendorfer, A. Hughes, B. Harris, and A. Boyd, "Examining perspectives on the adoption and use of computer-based patient-reported outcomes among clinicians and health professionals: a Q methodology study.", J Am Med Inform Assoc, vol. 29, issue 3, pp. 443-452, 2022 Jan 29.
PMCID: PMC8800531 PMID: 34871423
Sehgal, S., R. S. Gupta, M. Wlodarski, L. A. Bilaver, F. H. Wehbe, J. M. Spergel, J. Wang, C. E. Ciaccio, M. Makhija, and J. B. Starren, "Development of Food Allergy Data Dictionary: Toward a Food Allergy Data Commons.", J Allergy Clin Immunol Pract, vol. 10, issue 6, pp. 1614-1621.e1, 2022 Jun.
Thomas, J. A., R. E. Foraker, N. Zamstein, J. D. Morrow, P. R. O. Payne, and A. B. Wilcox, "Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C).", J Am Med Inform Assoc, vol. 29, issue 8, pp. 1350-1365, 2022 Jul 12.
PMCID: PMC8992357 PMID: 35357487
2021
Grant, R. A., L. Morales-Nebreda, N. S. Markov, S. Swaminathan, M. Querrey, E. R. Guzman, D. A. Abbott, H. K. Donnelly, A. Donayre, I. A. Goldberg, et al., "Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia.", Nature, vol. 590, issue 7847, pp. 635-641, 2021 Feb.
PMCID: PMC7987233 PMID: 33429418
Eric, V., V. Yi, D. Murdock, S. E. Kalla, T-J. Wu, A. Sabo, S. Li, Q. Meng, X. Tian, M. Murugan, et al., "Neptune: an environment for the delivery of genomic medicine.", Genet Med, vol. 23, issue 10, pp. 1838-1846, 2021 Oct.
PMCID: PMC8487966 PMID: 34257418
Sun, J., R. C. Patel, Q. Zheng, V. Madhira, A. L. Olex, J. Y. Islam, E. French, T. Po- Yu Chiang, H. Akselrod, R. Moffitt, et al., "COVID-19 Disease Severity among People with HIV Infection or Solid Organ Transplant in the United States: A Nationally-representative, Multicenter, Observational Cohort Study.", medRxiv, 2021 Jul 28.
PMCID: PMC8328066 PMID: 34341798
Murugan, M., L. J. Babb, C. Overby Taylor, L. V. Rasmussen, R. R. Freimuth, E. Venner, F. Yan, V. Yi, S. J. Granite, H. Zouk, et al., "Genomic considerations for FHIR®; eMERGE implementation lessons.", J Biomed Inform, vol. 118, pp. 103795, 2021 Jun.
PMCID: PMC8583906 PMID: 33930535
Bennett, T. D., R. A. Moffitt, J. G. Hajagos, B. Amor, A. Anand, M. M. Bissell, K. Rebecca Bradwell, C. Bremer, J. Brian Byrd, A. Denham, et al., "Clinical Characterization and Prediction of Clinical Severity of SARS-CoV-2 Infection Among US Adults Using Data From the US National COVID Cohort Collaborative.", JAMA Netw Open, vol. 4, issue 7, pp. e2116901, 2021 Jul 01.
PMCID: PMC8278272 PMID: 34255046
Starren, J. B., W. M. Tierney, M. S. Williams, P. Tang, C. Weir, R. Koppel, P. Payne, G. Hripcsak, and D. E. Detmer, "A retrospective look at the predictions and recommendations from the 2009 AMIA policy meeting: did we see EHR-related clinician burnout coming?", J Am Med Inform Assoc, vol. 28, issue 5, pp. 948-954, 2021 Apr 23.
PMCID: PMC8068422 PMID: 33585936
2020
Nelson, T. A., B. Anderson, J. Bian, A. D. Boyd, S. V. Burton, K. Davis, Y. Guo, B. A. Harris, K. Hynes, K. M. Kochendorfer, et al., "Planning for patient-reported outcome implementation: Development of decision tools and practical experience across four clinics.", J Clin Transl Sci, vol. 4, issue 6, pp. 498-507, 2020 Apr 06.
PMCID: PMC8057386 PMID: 33948226
2019
Zeng, Z., Y. Zhao, M. Sun, A. H. Vo, J. Starren, and Y. Luo, "Rich Text Formatted EHR Narratives: A Hidden and Ignored Trove.", Stud Health Technol Inform, vol. 264, pp. 472-476, 2019 Aug 21.
PMCID: PMC8060951 PMID: 31437968
Herr, T. M., J. F. Peterson, L. V. Rasmussen, P. J. Caraballo, P. L. Peissig, and J. B. Starren, "Pharmacogenomic clinical decision support design and multi-site process outcomes analysis in the eMERGE Network.", J Am Med Inform Assoc, vol. 26, issue 2, pp. 143-148, 2019 Feb 01.
PMCID: PMC6339514 PMID: 30590574
Rasmussen, L. V., M. E. Smith, F. Almaraz, S. D. Persell, L. J. Rasmussen-Torvik, J. A. Pacheco, R. L. Chisholm, C. Christensen, T. M. Herr, F. H. Wehbe, et al., "An ancillary genomics system to support the return of pharmacogenomic results.", J Am Med Inform Assoc, vol. 26, issue 4, pp. 306-310, 2019 Apr 01.
PMCID: PMC6402311 PMID: 30778576
2018
Luo, Y., Y. Cheng, Ö. Uzuner, P. Szolovits, and J. Starren, "Segment convolutional neural networks (Seg-CNNs) for classifying relations in clinical notes.", J Am Med Inform Assoc, vol. 25, issue 1, pp. 93-98, 2018 Jan 01.
PMCID: PMC6381760 PMID: 29025149
2017
Fort, D. G., T. M. Herr, P. L. Shaw, K. E. Gutzman, and J. B. Starren, "Mapping the evolving definitions of translational research.", J Clin Transl Sci, vol. 1, issue 1, pp. 60-66, 2017 Feb.
PMCID: PMC5408839 PMID: 28480056
2016
Valenta, A. L., E. A. Meagher, U. Tachinardi, and J. Starren, "Core informatics competencies for clinical and translational scientists: what do our customers and collaborators need to know?", J Am Med Inform Assoc, vol. 23, issue 4, pp. 835-9, 2016 Jul.
PMCID: PMC4926750 PMID: 27121608
Rasmussen, L. V., C. L. Overby, J. Connolly, C. G. Chute, J. C. Denny, R. Freimuth, A. L. Hartzler, I. A. Holm, S. Manzi, J. Pathak, et al., "Practical considerations for implementing genomic information resources. Experiences from eMERGE and CSER.", Appl Clin Inform, vol. 7, issue 3, pp. 870-82, 2016 Sep 21.
PMCID: PMC5052555 PMID: 27652374
2015
Herr, T. M., S. J. Bielinski, E. Bottinger, A. Brautbar, M. Brilliant, C. G. Chute, J. Denny, R. R. Freimuth, A. Hartzler, J. Kannry, et al., "A conceptual model for translating omic data into clinical action.", J Pathol Inform, vol. 6, pp. 46, 2015.
PMCID: PMC4584438 PMID: 26430534
Herr, T. M., S. J. Bielinski, E. Bottinger, A. Brautbar, M. Brilliant, C. G. Chute, B. L. Cobb, J. C. Denny, H. Hakonarson, A. L. Hartzler, et al., "Practical considerations in genomic decision support: The eMERGE experience.", J Pathol Inform, vol. 6, pp. 50, 2015.
PMCID: PMC4629307 PMID: 26605115
Shirts, B. H., J. S. Salama, S. J. Aronson, W. K. Chung, S. W. Gray, L. A. Hindorff, G. P. Jarvik, S. E. Plon, E. M. Stoffel, P. Z. Tarczy-Hornoch, et al., "CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record.", J Am Med Inform Assoc, vol. 22, issue 6, pp. 1231-42, 2015 Nov.
PMCID: PMC5009914 PMID: 26142422
Starren, J. B., A. Q. Winter, and D. M. Lloyd-Jones, "Enabling a Learning Health System through a Unified Enterprise Data Warehouse: The Experience of the Northwestern University Clinical and Translational Sciences (NUCATS) Institute.", Clin Transl Sci, vol. 8, issue 4, pp. 269-71, 2015 Aug.
PMCID: PMC4553136 PMID: 26032246
2014
Zheng, Y., Z. Fei, W. Zhang, J. B. Starren, L. Liu, A. A. Baccarelli, Y. Li, and L. Hou, "PGS: a tool for association study of high-dimensional microRNA expression data with repeated measures.", Bioinformatics, vol. 30, issue 19, pp. 2802-7, 2014 Oct.
PMCID: PMC4173025 PMID: 24947752
Overby, C. L., L. V. Rasmussen, A. Hartzler, J. J. Connolly, J. F. Peterson, RM. E. Hedberg, R. R. Freimuth, B. H. Shirts, J. C. Denny, E. B. Larson, et al., "A Template for Authoring and Adapting Genomic Medicine Content in the eMERGE Infobutton Project.", AMIA Annu Symp Proc, vol. 2014, pp. 944-53, 2014.
PMCID: PMC4419923 PMID: 25954402
Rasmussen, L. V., W. K. Thompson, J. A. Pacheco, A. N. Kho, D. S. Carrell, J. Pathak, P. L. Peissig, G. Tromp, J. C. Denny, and J. B. Starren, "Design patterns for the development of electronic health record-driven phenotype extraction algorithms.", J Biomed Inform, vol. 51, pp. 280-6, 2014 Oct.
PMCID: PMC4194216 PMID: 24960203
2013
Gottesman, O., H. Kuivaniemi, G. Tromp, A. W Faucett, R. Li, T. A. Manolio, S. C. Sanderson, J. Kannry, R. Zinberg, M. A. Basford, et al., "The Electronic Medical Records and Genomics (eMERGE) Network: past, present, and future.", Genet Med, vol. 15, issue 10, pp. 761-71, 2013 Oct.
PMCID: PMC3795928 PMID: 23743551
Overby, C. Lynnette, I. Kohane, J. L. Kannry, M. S. Williams, J. Starren, E. Bottinger, O. Gottesman, J. C. Denny, C. Weng, P. Tarczy-Hornoch, et al., "Opportunities for genomic clinical decision support interventions.", Genet Med, vol. 15, issue 10, pp. 817-23, 2013 Oct.
PMCID: PMC3858176 PMID: 24051479
Tucker, W., and J. Starren, "Review: No clear benefit from information and communication technology-delivered support and education compared with standard care in people with schizophrenia.", Evid Based Ment Health, vol. 16, issue 2, pp. 43, 2013 May.
Kho, A. N., L. V. Rasmussen, J. J. Connolly, P. L. Peissig, J. Starren, H. Hakonarson, and G. M Hayes, "Practical challenges in integrating genomic data into the electronic health record.", Genet Med, vol. 15, issue 10, pp. 772-8, 2013 Oct.
PMCID: PMC4201621 PMID: 24071798
Embi, P. J., U. Tachinardi, Y. Lussier, J. Starren, and J. Silverstein, "Integrating Governance of Research Informatics and Health Care IT Across an Enterprise: Experiences from the Trenches.", AMIA Jt Summits Transl Sci Proc, vol. 2013, pp. 60-2, 2013.
PMCID: PMC3845750
2012
Peissig, P. L., L. V. Rasmussen, R. L. Berg, J. G. Linneman, C. A. McCarty, C. Waudby, L. Chen, J. C. Denny, R. A. Wilke, J. Pathak, et al., "Importance of multi-modal approaches to effectively identify cataract cases from electronic health records.", J Am Med Inform Assoc, vol. 19, issue 2, pp. 225-34, 2012 Mar-Apr.
PMCID: PMC3277618 PMID: 22319176
Rasmussen, L. V., P. L. Peissig, C. A. McCarty, and J. Starren, "Development of an optical character recognition pipeline for handwritten form fields from an electronic health record.", J Am Med Inform Assoc, vol. 19, issue e1, pp. e90-5, 2012 Jun.
PMCID: PMC3392858 PMID: 21890871
2011
Huser, V., L. V. Rasmussen, R. Oberg, and J. B. Starren, "Implementation of workflow engine technology to deliver basic clinical decision support functionality.", BMC Med Res Methodol, vol. 11, pp. 43, 2011 Apr 10.
PMCID: PMC3079703 PMID: 21477364
Plasek, J. M., D. S. Pieczkiewicz, A. N. Mahnke, C. A. McCarty, J. B. Starren, and B. L. Westra, "The role of nonverbal and verbal communication in a multimedia informed consent process.", Appl Clin Inform, vol. 2, issue 2, pp. 240-9, 2011.
PMCID: PMC3631917
Bloomrosen, M., J. Starren, N. M. Lorenzi, J. S. Ash, V. L. Patel, and E. H. Shortliffe, "Anticipating and addressing the unintended consequences of health IT and policy: a report from the AMIA 2009 Health Policy Meeting.", J Am Med Inform Assoc, vol. 18, issue 1, pp. 82-90, 2011 Jan-Feb.
PMCID: PMC3005876
Acharya, A., A. Mahnke, P-H. Chyou, C. Rottscheit, and J. B. Starren, "Medical providers' dental information needs: a baseline survey.", Stud Health Technol Inform, vol. 169, pp. 387-91, 2011.
PMCID: PMC4124731 PMID: 21893778
2010
Wilke, R. A., R. L. Berg, J. G. Linneman, P. Peissig, J. Starren, M. D. Ritchie, and C. A. McCarty, "Quantification of the clinical modifiers impacting high-density lipoprotein cholesterol in the community: Personalized Medicine Research Project.", Prev Cardiol, vol. 13, issue 2, pp. 63-8, 2010 Spring.
PMCID: PMC5206993 PMID: 20377807
Payne, P. R. O., P. J. Embi, S. B. Johnson, E. Mendonca, and J. Starren, "Improving Clinical Trial Participant Tracking Tools Using Knowledge-anchored Design Methodologies.", Appl Clin Inform, vol. 1, issue 2, pp. 177-196, 2010.
PMCID: PMC3225206 PMID: 22132037
Robinson, K. S., P. C. Morin, J. Ann C. Shupe, R. Izquierdo, R. Ploutz-Snyder, S. Meyer, J. A. Teresi, J. Starren, S. Shea, and R. S. Weinstock, "Use of three computer training methods in elderly underserved rural patients enrolled in a diabetes telemedicine program.", Comput Inform Nurs, vol. 28, issue 3, pp. 172-7, 2010 May-Jun.
Williams, S. L., L. Wang, S. A. Kane, T. C. Lee, D. J. Weissgold, A. M. Berrocal, D. Rabinowitz, J. Starren, J. T. Flynn, and M. F. Chiang, "Telemedical diagnosis of retinopathy of prematurity: accuracy of expert versus non-expert graders.", Br J Ophthalmol, vol. 94, issue 3, pp. 351-6, 2010 Mar.
PMCID: PMC3711625 PMID: 19955195
Palmas, W., S. Shea, J. Starren, J. A. Teresi, M. L. Ganz, T. M. Burton, C. L. Pashos, J. Blustein, L. Field, P. C. Morin, et al., "Medicare payments, healthcare service use, and telemedicine implementation costs in a randomized trial comparing telemedicine case management with usual care in medically underserved participants with diabetes mellitus (IDEATel).", J Am Med Inform Assoc, vol. 17, issue 2, pp. 196-202, 2010 Mar-Apr.
PMCID: PMC3000788
Lee, J-Y., Y. E. Du, O. Coki, J. T. Flynn, J. Starren, and M. F. Chiang, "Parental perceptions toward digital imaging and telemedicine for retinopathy of prematurity management.", Graefes Arch Clin Exp Ophthalmol, vol. 248, issue 1, pp. 141-7, 2010 Jan.
PMCID: PMC8062160 PMID: 19774354
2009
Lai, A. M., D. R. Kaufman, J. Starren, and S. Shea, "Evaluation of a remote training approach for teaching seniors to use a telehealth system.", Int J Med Inform, vol. 78, issue 11, pp. 732-44, 2009 Nov.
PMCID: PMC2757535 PMID: 19620023
Hilliman, C. A., J. J. Cimino, A. M. Lai, D. R. Kaufman, J. B. Starren, and S. Shea, "The effects of redesigning the IDEATel architecture on glucose uploads.", Telemed J E Health, vol. 15, issue 3, pp. 248-54, 2009 Apr.
PMCID: PMC2956565
Richter, G. M., G. Sun, T. C. Lee, R. V. Paul Chan, J. T. Flynn, J. Starren, and M. F. Chiang, "Speed of telemedicine vs ophthalmoscopy for retinopathy of prematurity diagnosis.", Am J Ophthalmol, vol. 148, issue 1, pp. 136-42.e2, 2009 Jul.
PMCID: PMC2820880 PMID: 19376496
Richter, G. M., S. L. Williams, J. Starren, J. T. Flynn, and M. F. Chiang, "Telemedicine for retinopathy of prematurity diagnosis: evaluation and challenges.", Surv Ophthalmol, vol. 54, issue 6, pp. 671-85, 2009 Nov-Dec.
PMCID: PMC2760626 PMID: 19665742
Bernstam, E. V., W. R. Hersh, S. B. Johnson, C. G. Chute, H. Nguyen, I. Sim, M. Nahm, M. G. Weiner, P. Miller, R. P. DiLaura, et al., "Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs.", Acad Med, vol. 84, issue 7, pp. 964-70, 2009 Jul.
PMCID: PMC2884382 PMID: 19550198
Shea, S., R. S. Weinstock, J. A. Teresi, W. Palmas, J. Starren, J. J. Cimino, A. M. Lai, L. Field, P. C. Morin, R. Goland, et al., "A randomized trial comparing telemedicine case management with usual care in older, ethnically diverse, medically underserved patients with diabetes mellitus: 5 year results of the IDEATel study.", J Am Med Inform Assoc, vol. 16, issue 4, pp. 446-56, 2009 Jul-Aug.
PMCID: PMC2705246
Chiang, M. F., R. Gelman, E. M Martinez-Perez, Y. E. Du, D. S. Casper, L. M. Currie, P. D. Shah, J. Starren, and J. T. Flynn, "Image analysis for retinopathy of prematurity diagnosis.", J AAPOS, vol. 13, issue 5, pp. 438-45, 2009 Oct.
PMCID: PMC2765401 PMID: 19840720
Kaufman, D. R., J. Pevzner, M. Rodriguez, J. J. Cimino, S. Ebner, L. Fields, V. Moreno, C. McGuiness, R. S. Weinstock, S. Shea, et al., "Understanding workflow in telehealth video visits: observations from the IDEATel project.", J Biomed Inform, vol. 42, issue 4, pp. 581-92, 2009 Aug.
2008
Newhouse, J. H., D. Kho, Q. A. Rao, and J. Starren, "Frequency of serum creatinine changes in the absence of iodinated contrast material: implications for studies of contrast nephrotoxicity.", AJR Am J Roentgenol, vol. 191, issue 2, pp. 376-82, 2008 Aug.
Lajoie, A., S. Koreen, L. Wang, S. A. Kane, T. C. Lee, D. J. Weissgold, A. M. Berrocal, Y. E. Du, O. Coki, J. T. Flynn, et al., "Retinopathy of prematurity management using single-image vs multiple-image telemedicine examinations.", Am J Ophthalmol, vol. 146, issue 2, pp. 298-309, 2008 Aug.
PMCID: PMC2580058 PMID: 18547536
2007
Tudiver, F., T. L Wolff, P. C. Morin, J. Teresi, W. Palmas, J. Starren, S. Shea, and R. S. Weinstock, "Primary care providers' perceptions of home diabetes telemedicine care in the IDEATel project.", J Rural Health, vol. 23, issue 1, pp. 55-61, 2007 Winter.
2002
Starren, J., G. Hripcsak, S. Sengupta, C. R. Abbruscato, P. E. Knudson, R. S. Weinstock, and S. Shea, "Columbia University's Informatics for Diabetes Education and Telemedicine (IDEATel) project: technical implementation.", J Am Med Inform Assoc, vol. 9, issue 1, pp. 25-36, 2002 Jan-Feb.
PMCID: PMC349385
Sarkar, I. Neil, and J. Starren, "Desiderata for personal electronic communication in clinical systems.", J Am Med Inform Assoc, vol. 9, issue 3, pp. 209-16, 2002 May-Jun.
PMCID: PMC344580 PMID: 11971881
1990
Platen, H., A. Temmes, and B. Schink, "Anaerobic degradation of acetone by Desulfococcus biacutus spec. nov.", Arch Microbiol, vol. 154, issue 4, pp. 355-61, 1990.